API
===

.. contents:: Modules
   :local:

run
:::

.. automodule:: wonkyconn.run
    :members:

workflow
::::::::

.. automodule:: wonkyconn.workflow
    :members:

config
::::::

.. automodule:: wonkyconn.config
    :members:

atlas
:::::

.. automodule:: wonkyconn.atlas
    :members:

base
::::

.. automodule:: wonkyconn.base
    :members:

correlation
:::::::::::

.. automodule:: wonkyconn.correlation
    :members:

logger
::::::

.. automodule:: wonkyconn.logger
    :members:

features
--------

features.quality_control_connectivity
::::::::::::::::::::::::::::::::::::::

.. automodule:: wonkyconn.features.quality_control_connectivity
    :members:

features.network
::::::::::::::::

.. automodule:: wonkyconn.features.network
    :members:

features.gcor
:::::::::::::

.. automodule:: wonkyconn.features.gcor
    :members:

features.distance_dependence
::::::::::::::::::::::::::::

.. automodule:: wonkyconn.features.distance_dependence
    :members:

features.calculate_degrees_of_freedom
::::::::::::::::::::::::::::::::::::::

.. automodule:: wonkyconn.features.calculate_degrees_of_freedom
    :members:

features.calculate_gradients_correlation
::::::::::::::::::::::::::::::::::::::::

.. automodule:: wonkyconn.features.calculate_gradients_correlation
    :members:

features.age_sex_prediction
:::::::::::::::::::::::::::

.. automodule:: wonkyconn.features.age_sex_prediction
    :members:

file_index
----------

file_index.base
:::::::::::::::

.. automodule:: wonkyconn.file_index.base
    :members:

file_index.bids
:::::::::::::::

.. automodule:: wonkyconn.file_index.bids
    :members:

visualization
-------------

visualization.plot
::::::::::::::::::

.. automodule:: wonkyconn.visualization.plot
    :members: