Index

A

age_sex_scores() (in module wonkyconn.features.age_sex_prediction)

Atlas (class in wonkyconn.atlas)

C

calculate_degrees_of_freedom_loss() (in module wonkyconn.features.calculate_degrees_of_freedom) calculate_distance_dependence() (in module wonkyconn.features.distance_dependence) calculate_for_key() (in module wonkyconn.features.calculate_degrees_of_freedom) calculate_gcor() (in module wonkyconn.features.gcor) calculate_gradients_similarity() (in module wonkyconn.features.calculate_gradients_correlation) calculate_median_absolute() (in module wonkyconn.features.quality_control_connectivity) calculate_qcfc() (in module wonkyconn.features.quality_control_connectivity)

calculate_qcfc_percentage() (in module wonkyconn.features.quality_control_connectivity) clean_matrix_from_atlas() (in module wonkyconn.features.calculate_gradients_correlation) compute_gcor() (in module wonkyconn.features.gcor) confound_regression_percentage (wonkyconn.features.calculate_degrees_of_freedom.DegreesOfFreedomLossResult attribute) ConnectivityMatrix (class in wonkyconn.base) create() (wonkyconn.atlas.Atlas static method) create_defaultdict_of_set() (in module wonkyconn.file_index.base)

D

DegreesOfFreedomLossResult (class in wonkyconn.features.calculate_degrees_of_freedom)

DsegAtlas (class in wonkyconn.atlas)

E

extract_gradients() (in module wonkyconn.features.calculate_gradients_correlation)

F

from_cli_args() (wonkyconn.config.WonkyConnConfig class method)

G

get_centroid_points() (wonkyconn.atlas.Atlas method) (wonkyconn.atlas.DsegAtlas method) (wonkyconn.atlas.ProbsegAtlas method) get_centroids() (wonkyconn.atlas.Atlas method) get_distance_matrix() (wonkyconn.atlas.Atlas method)

get_yeo7_membership() (wonkyconn.atlas.Atlas method) (wonkyconn.atlas.DsegAtlas method) (wonkyconn.atlas.ProbsegAtlas method) global_parser() (in module wonkyconn.run) group_mean_connectivity() (in module wonkyconn.features.calculate_gradients_correlation)

I

image (wonkyconn.atlas.Atlas attribute)

is_halfpipe() (in module wonkyconn.workflow)

L

load() (wonkyconn.base.ConnectivityMatrix method)

load_data_frame() (in module wonkyconn.workflow) load_yeo7_network() (wonkyconn.atlas.Atlas method)

M

main() (in module wonkyconn.run) make_record() (in module wonkyconn.workflow) metadata (wonkyconn.base.ConnectivityMatrix attribute) module wonkyconn.atlas wonkyconn.base wonkyconn.config wonkyconn.correlation wonkyconn.features.age_sex_prediction wonkyconn.features.calculate_degrees_of_freedom wonkyconn.features.calculate_gradients_correlation wonkyconn.features.distance_dependence wonkyconn.features.gcor wonkyconn.features.network wonkyconn.features.quality_control_connectivity wonkyconn.file_index.base wonkyconn.file_index.bids wonkyconn.logger wonkyconn.run wonkyconn.visualization.plot wonkyconn.workflow

motion_scrubbing_percentage (wonkyconn.features.calculate_degrees_of_freedom.DegreesOfFreedomLossResult attribute)

N

network_similarity() (in module wonkyconn.features.network)

nonsteady_states_detector_percentage (wonkyconn.features.calculate_degrees_of_freedom.DegreesOfFreedomLossResult attribute)

O

overlapping_atlas_with_mask() (in module wonkyconn.features.calculate_gradients_correlation)

P

parse() (in module wonkyconn.file_index.bids) path (wonkyconn.base.ConnectivityMatrix attribute) plot() (in module wonkyconn.visualization.plot)

plot_degrees_of_freedom_loss() (in module wonkyconn.visualization.plot) ProbsegAtlas (class in wonkyconn.atlas) process_single_matrix() (in module wonkyconn.features.calculate_gradients_correlation)

R

region_count (wonkyconn.base.ConnectivityMatrix property)

remove_nan_from_matrix() (in module wonkyconn.features.calculate_gradients_correlation) remove_nan_roi_atlas() (in module wonkyconn.features.calculate_gradients_correlation)

S

seg (wonkyconn.atlas.Atlas attribute) set_verbosity() (in module wonkyconn.logger)

significant_level() (in module wonkyconn.features.quality_control_connectivity) single_subject_within_network_connectivity() (in module wonkyconn.features.network) split_ext() (in module wonkyconn.file_index.bids)

T

to_namespace() (wonkyconn.config.WonkyConnConfig method)

training_pipeline() (in module wonkyconn.features.age_sex_prediction)

W

wonkyconn.atlas module wonkyconn.base module wonkyconn.config module wonkyconn.correlation module wonkyconn.features.age_sex_prediction module wonkyconn.features.calculate_degrees_of_freedom module wonkyconn.features.calculate_gradients_correlation module wonkyconn.features.distance_dependence module wonkyconn.features.gcor module

wonkyconn.features.network module wonkyconn.features.quality_control_connectivity module wonkyconn.file_index.base module wonkyconn.file_index.bids module wonkyconn.logger module wonkyconn.run module wonkyconn.visualization.plot module wonkyconn.workflow module WonkyConnConfig (class in wonkyconn.config) workflow() (in module wonkyconn.workflow)